Publications

Found 30 results
[ Type(Asc)] Year
Report
Peters, A, Lundberg, ME, Lang, PT, and Sosa, CP. High Throughput Computing Validation for Drug Discovery Using the DOCK Program on a Massively Parallel System In RedPaper. Armonk, NY: IBM, 2007.
Journal Article
You, Y, Fu, H, Song, SL, Randles, A, Kerbyson, D, Marquez, A, Yang, G, and Hoisie, A. "Scaling Support Vector Machines on modern HPC platforms." Journal of Parallel and Distributed Computing (2014): 16-31.
Randles, A, and Kaxiras, E. "Parallel in time approximation of the lattice Boltzmann method for laminar flows." Journal of Computational Physics 270 (2014): 577-586.
Gounley, J., Draeger, E.W., and Randles, A. "Numerical simulation of a compound capsule in a constricted microchannel." Elsevier Procedia Computer Science, International Conference on Computational Science, Vol. 108 (2017).
Keyes, DE, McInnes, LC, Woodward, C, Gropp, W, Myra, E, Pernice, M, Bell, J, Brown, J, Clo, A, Connors, J et al. "Multiphysics simulations: Challenges and opportunities." International Journal of High Performance Computing Applications 27, no. 1 (2013): 4-83.
Dabagh, M., Jalali, P., Butler, P.J., Randles, A., and Tarbell, J.M. "Mechanotransmission in endothelial cells subjected to oscillatory and multi-directional shear flow." Journal of The Royal Society Interface 14, no. 130 (2017).
Randles, A, Draeger, EW, and Bailey, PE. "Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature." Journal of Computational Science 9 (2015): 70-75.
Whitley, HD, Scullard, CR, Benedict, LX, Castor, JI, Randles, A, Glosli, JN, Richards, DF, Desjarlais, MP, and Graziani, FR. "Lenard-Balescu Calculations and Classical Molecular Dynamics Simulations of Electrical and Thermal Conductivities of Hydrogen Plasmas." Contributions to Plasma Physics 55, no. 2-3 (2015): 192-202.
Randles, A, Baecher, M, Pfister, H, and Kaxiras, E. "A Lattice Boltzmann Simulation of Hemodynamics in a Patient-Specific Aortic Coarctation Model." Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges: Third International Workshop, STACOM 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 5, 2012, Revised Selected Papers (2012): 17-25.
Almendro, V, Cheng, YK, Randles, A, Itzkovitz, S, Marusyk, A, Ametller, E, Gonzalez-Farre, X, Muñoz, M, Russnes, HG, Helland, Å et al. "Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity." Cell Reports 6, no. 3 (2014): 514-527.
Borkin, M, Gajos, K, Peters, A, Mitsouras, D, Melchionna, S, Rybicki, F, Feldman, C, and Pfister, H. "Evaluation of Artery Visualizations for Heart Disease Diagnosis." IEEE Transactions on Visualization and Computer Graphics 17, no. 12 (2011): 2479-2488.
Pang, Y-P, Mullins, TJ, Swartz, BA, McAllister, JS, Smith, BE, Archer, CJ, Musselman, RG, Peters, AE, Wallenfelt, BP, and Pinnow, KW. "EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient." IBM Journal of Research and Development 52, no. 1.2 (2008): 69-81.
Jiang, K, Thorsen, O, Peters, A, Smith, B, and Sosa, CP. "An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System." IEEE Transactions on Parallel and Distributed Systems 19, no. 1 (2008): 15-23.
Robson, B, Li, J, Dettinger, R, Peters, A, and Boyer, SK. "Drug discovery using very large numbers of patents. General strategy with extensive use of match and edit operations." Journal of Computer-Aided Molecular Design 25, no. 5 (2011): 427-441.
Randles, Amanda, Frakes, David H., and Leopold, Jane A. "Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease." Trends in Biotechnology (accepted) (2017).
Randles, A, Draeger, E, and Michor, F. "Analysis of pressure gradient across aortic stenosis with massively parallel computational simulations." Computing in Cardiology (CinC) 41, no. January (2014): 217-220.
Conference Proceedings
Laurence, T.A., Ly, S., Fong, E., Shusteff, M., Randles, A., Gounley, J., and Draeger, E. Using stroboscopic flow imaging to validate large-scale computational fluid dynamics simulations In SPIE Photonics West. Vol. 10076., 2017.
Gounley, J., Vardhan, M., and Randles, A. A computational framework to assess the influence of changes in vascular geometry on blood flow. In Proceedings of the Platform for Advanced Scientific Computing Conference. (accepted). ACM, 2017.
Conference Paper
Randles, A, and Kaxiras, E. "A Spatio-Temporal Coupling Method to Reduce the Time-to-Solution of Cardiovascular Simulations." In Proceedings of the 28th IEEE International Parallel and Distributed Processing Symposium (IPDPS)., 2014.
Randles, AP, Kale, V, Hammond, J, Gropp, W, and Kaxiras, E. "Performance analysis of the lattice Boltzmann model beyond Navier-Stokes." In Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013, 1063-1074., 2013.
Thorsen, O, Jiang, K, Peters, A, Smith, B, Lin, H, Feng, W, and Sosa, CP. "Parallel Genomic Sequence-Search on a Massively Parallel System." In ACM International Conference on Computing Frontiers., 2007.
Randles, A, Melchionna, S, Kaxiras, E, Latt, J, Sircar, J, Bernaschi, M, Bisson, M, and Succi, S. "Multiscale simulation of cardiovascular flows on the IBM Bluegene/P: full heart-circulation system at red-blood cell resolution." In Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC)., 2010.
You, Y, Song, SL, Fu, H, Marquez, A, Dehnavi, MM, Barker, K, Cameron, KW, Randles, AP, and Yang, G. "MIC-SVM: Designing a highly efficient support vector machine for advanced modern multi-core and many-core architectures." In Proceedings of the 28th IEEE International Parallel and Distributed Processing Symposium (IPDPS), 809-818. Phoenix, AZ: IEEE, 2014.
Randles, A, Draeger, EW, Oppelstrup, T, Krauss, L, and Gunnels, JA. "Massively parallel models of the human circulatory system." In International Conference for High Performance Computing, Networking, Storage and Analysis, SC. Vol. 15-20-November-2015., 2015.
Randles, AP, Rand, DG, Lee, C, Morrisett, G, Sircar, J, Nowak, MA, and Pfister, H. "Massively parallel model of extended memory use in evolutionary game dynamics." In Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013, 1217-1228. Boston, MA: IEEE, 2013.

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