Publications

Found 30 results
[ Type(Asc)] Year
Report
A Peters, ME Lundberg, PT Lang, and CP Sosa. High Throughput Computing Validation for Drug Discovery Using the DOCK Program on a Massively Parallel System In RedPaper. Armonk, NY: IBM, 2007.
Journal Article
Y You, H Fu, SL Song, A Randles, D Kerbyson, A Marquez, G Yang, and A Hoisie. "Scaling Support Vector Machines on modern HPC platforms." Journal of Parallel and Distributed Computing (2014): 16-31.
A Randles, and E Kaxiras. "Parallel in time approximation of the lattice Boltzmann method for laminar flows." Journal of Computational Physics 270 (2014): 577-586.
J. Gounley, E.W. Draeger, and A. Randles. "Numerical simulation of a compound capsule in a constricted microchannel." Elsevier Procedia Computer Science, International Conference on Computational Science, Vol. 108 (2017).
DE Keyes, LC McInnes, C Woodward, W Gropp, E Myra, M Pernice, J Bell, J Brown, A Clo, J Connors et al. "Multiphysics simulations: Challenges and opportunities." International Journal of High Performance Computing Applications 27, no. 1 (2013): 4-83.
M. Dabagh, P. Jalali, P.J. Butler, A. Randles, and J.M. Tarbell. "Mechanotransmission in endothelial cells subjected to oscillatory and multi-directional shear flow." Journal of The Royal Society Interface 14, no. 130 (2017).
A Randles, EW Draeger, and PE Bailey. "Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature." Journal of Computational Science 9 (2015): 70-75.
HD Whitley, CR Scullard, LX Benedict, JI Castor, A Randles, JN Glosli, DF Richards, MP Desjarlais, and FR Graziani. "Lenard-Balescu Calculations and Classical Molecular Dynamics Simulations of Electrical and Thermal Conductivities of Hydrogen Plasmas." Contributions to Plasma Physics 55, no. 2-3 (2015): 192-202.
A Randles, M Baecher, H Pfister, and E Kaxiras. "A Lattice Boltzmann Simulation of Hemodynamics in a Patient-Specific Aortic Coarctation Model." Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges: Third International Workshop, STACOM 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 5, 2012, Revised Selected Papers (2012): 17-25.
V Almendro, YK Cheng, A Randles, S Itzkovitz, A Marusyk, E Ametller, X Gonzalez-Farre, M Muñoz, HG Russnes, Å Helland et al. "Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity." Cell Reports 6, no. 3 (2014): 514-527.
M Borkin, K Gajos, A Peters, D Mitsouras, S Melchionna, F Rybicki, C Feldman, and H Pfister. "Evaluation of Artery Visualizations for Heart Disease Diagnosis." IEEE Transactions on Visualization and Computer Graphics 17, no. 12 (2011): 2479-2488.
Y-P Pang, TJ Mullins, BA Swartz, JS McAllister, BE Smith, CJ Archer, RG Musselman, AE Peters, BP Wallenfelt, and KW Pinnow. "EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient." IBM Journal of Research and Development 52, no. 1.2 (2008): 69-81.
K Jiang, O Thorsen, A Peters, B Smith, and CP Sosa. "An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System." IEEE Transactions on Parallel and Distributed Systems 19, no. 1 (2008): 15-23.
B Robson, J Li, R Dettinger, A Peters, and SK Boyer. "Drug discovery using very large numbers of patents. General strategy with extensive use of match and edit operations." Journal of Computer-Aided Molecular Design 25, no. 5 (2011): 427-441.
Amanda Randles, David H. Frakes, and Jane A. Leopold. "Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease." Trends in Biotechnology 35, no. 11 (2017): 1061.
A Randles, E Draeger, and F Michor. "Analysis of pressure gradient across aortic stenosis with massively parallel computational simulations." Computing in Cardiology (CinC) 41, no. January (2014): 217-220.
Conference Proceedings
T.A. Laurence, S. Ly, E. Fong, M. Shusteff, A. Randles, J. Gounley, and E. Draeger. Using stroboscopic flow imaging to validate large-scale computational fluid dynamics simulations In SPIE Photonics West. Vol. 10076., 2017.
J. Gounley, M. Vardhan, and A. Randles. A computational framework to assess the influence of changes in vascular geometry on blood flow. In Proceedings of the Platform for Advanced Scientific Computing Conference. ACM, 2017.
Conference Paper
A Randles, and E Kaxiras. "A Spatio-Temporal Coupling Method to Reduce the Time-to-Solution of Cardiovascular Simulations." In Proceedings of the 28th IEEE International Parallel and Distributed Processing Symposium (IPDPS). 2014.
AP Randles, V Kale, J Hammond, W Gropp, and E Kaxiras. "Performance analysis of the lattice Boltzmann model beyond Navier-Stokes." In Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013, 1063-1074. 2013.
O Thorsen, K Jiang, A Peters, B Smith, H Lin, W Feng, and CP Sosa. "Parallel Genomic Sequence-Search on a Massively Parallel System." In ACM International Conference on Computing Frontiers. 2007.
A Randles, S Melchionna, E Kaxiras, J Latt, J Sircar, M Bernaschi, M Bisson, and S Succi. "Multiscale simulation of cardiovascular flows on the IBM Bluegene/P: full heart-circulation system at red-blood cell resolution." In Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC). 2010.
Y You, SL Song, H Fu, A Marquez, MM Dehnavi, K Barker, KW Cameron, AP Randles, and G Yang. "MIC-SVM: Designing a highly efficient support vector machine for advanced modern multi-core and many-core architectures." In Proceedings of the 28th IEEE International Parallel and Distributed Processing Symposium (IPDPS), 809-818. Phoenix, AZ: IEEE 2014.
A Randles, EW Draeger, T Oppelstrup, L Krauss, and JA Gunnels. "Massively parallel models of the human circulatory system." In International Conference for High Performance Computing, Networking, Storage and Analysis, SC. Vol. 15-20-November-2015. 2015.
AP Randles, DG Rand, C Lee, G Morrisett, J Sircar, MA Nowak, and H Pfister. "Massively parallel model of extended memory use in evolutionary game dynamics." In Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013, 1217-1228. Boston, MA: IEEE 2013.

Pages