Publications

Found 27 results
Type [ Year(Desc)]
2007
Peters, A, Lundberg, ME, Lang, PT, and Sosa, CP. High Throughput Computing Validation for Drug Discovery Using the DOCK Program on a Massively Parallel System In RedPaper. Armonk, NY: IBM, 2007.
Thorsen, O, Jiang, K, Peters, A, Smith, B, Lin, H, Feng, W, and Sosa, CP. "Parallel Genomic Sequence-Search on a Massively Parallel System." In ACM International Conference on Computing Frontiers., 2007.
2008
Peters, A, King, A, Budnik, T, McCarthy, P, and Michaud, P. "Asynchronous task dispatch for high throughput computing for the eServer IBM Blue Gene." In Proceedings of the IEEE International Parallel and Distributed Processing Symposium., 2008.
Jiang, K, Thorsen, O, Peters, A, Smith, B, and Sosa, CP. "An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System." IEEE Transactions on Parallel and Distributed Systems 19, no. 1 (2008): 15-23.
Pang, Y-P, Mullins, TJ, Swartz, BA, McAllister, JS, Smith, BE, Archer, CJ, Musselman, RG, Peters, AE, Wallenfelt, BP, and Pinnow, KW. "EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient." IBM Journal of Research and Development 52, no. 1.2 (2008): 69-81.
2010
Randles, A, Melchionna, S, Kaxiras, E, Latt, J, Sircar, J, Bernaschi, M, Bisson, M, and Succi, S. "Multiscale simulation of cardiovascular flows on the IBM Bluegene/P: full heart-circulation system at red-blood cell resolution." In Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC)., 2010.
2011
Robson, B, Li, J, Dettinger, R, Peters, A, and Boyer, SK. "Drug discovery using very large numbers of patents. General strategy with extensive use of match and edit operations." Journal of Computer-Aided Molecular Design 25, no. 5 (2011): 427-441.
Randles, A, and Zeger, L. "Efficient Resource Allocation for Broadcasting Multi-Slot Messages With Random Access with Capture." In Proceedings of IEEE Military Communications Conference (MILCOM)., 2011.
Borkin, M, Gajos, K, Peters, A, Mitsouras, D, Melchionna, S, Rybicki, F, Feldman, C, and Pfister, H. "Evaluation of Artery Visualizations for Heart Disease Diagnosis." IEEE Transactions on Visualization and Computer Graphics 17, no. 12 (2011): 2479-2488.
2012
Randles, A, Baecher, M, Pfister, H, and Kaxiras, E. "A Lattice Boltzmann Simulation of Hemodynamics in a Patient-Specific Aortic Coarctation Model." Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges: Third International Workshop, STACOM 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 5, 2012, Revised Selected Papers (2012): 17-25.
2013
Randles, AP, Rand, DG, Lee, C, Morrisett, G, Sircar, J, Nowak, MA, and Pfister, H. "Massively parallel model of extended memory use in evolutionary game dynamics." In Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013, 1217-1228. Boston, MA: IEEE, 2013.
Keyes, DE, McInnes, LC, Woodward, C, Gropp, W, Myra, E, Pernice, M, Bell, J, Brown, J, Clo, A, Connors, J et al. "Multiphysics simulations: Challenges and opportunities." International Journal of High Performance Computing Applications 27, no. 1 (2013): 4-83.
Randles, AP, Kale, V, Hammond, J, Gropp, W, and Kaxiras, E. "Performance analysis of the lattice Boltzmann model beyond Navier-Stokes." In Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013, 1063-1074., 2013.
2014
Randles, A, Draeger, E, and Michor, F. "Analysis of pressure gradient across aortic stenosis with massively parallel computational simulations." Computing in Cardiology (CinC) 41, no. January (2014): 217-220.
Randles, A, Driscoll, M, Draeger, EW, and Michor, F. "A Feasibility Study using Image-based Parallel Modeling for Treatment Planning." In Computing in Cardiology (CinC). Cambridge, MA, 2014.
Almendro, V, Cheng, YK, Randles, A, Itzkovitz, S, Marusyk, A, Ametller, E, Gonzalez-Farre, X, Muñoz, M, Russnes, HG, Helland, Å et al. "Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity." Cell Reports 6, no. 3 (2014): 514-527.
Kale, V, Randles, A, and Gropp, WD. "Locality-optimized mixed static/dynamic scheduling for improving load balancing on SMPs." In ACM International Conference Proceeding Series, 115-116. Vol. 09-12-September-2014., 2014.
You, Y, Song, SL, Fu, H, Marquez, A, Dehnavi, MM, Barker, K, Cameron, KW, Randles, AP, and Yang, G. "MIC-SVM: Designing a highly efficient support vector machine for advanced modern multi-core and many-core architectures." In Proceedings of the 28th IEEE International Parallel and Distributed Processing Symposium (IPDPS), 809-818. Phoenix, AZ: IEEE, 2014.
Randles, A, and Kaxiras, E. "Parallel in time approximation of the lattice Boltzmann method for laminar flows." Journal of Computational Physics 270 (2014): 577-586.
You, Y, Fu, H, Song, SL, Randles, A, Kerbyson, D, Marquez, A, Yang, G, and Hoisie, A. "Scaling Support Vector Machines on modern HPC platforms." Journal of Parallel and Distributed Computing (2014): 16-31.
Randles, A, and Kaxiras, E. "A Spatio-Temporal Coupling Method to Reduce the Time-to-Solution of Cardiovascular Simulations." In Proceedings of the 28th IEEE International Parallel and Distributed Processing Symposium (IPDPS)., 2014.
2015
Whitley, HD, Scullard, CR, Benedict, LX, Castor, JI, Randles, A, Glosli, JN, Richards, DF, Desjarlais, MP, and Graziani, FR. "Lenard-Balescu Calculations and Classical Molecular Dynamics Simulations of Electrical and Thermal Conductivities of Hydrogen Plasmas." Contributions to Plasma Physics 55, no. 2-3 (2015): 192-202.
Randles, A, Draeger, EW, Oppelstrup, T, Krauss, L, and Gunnels, JA. "Massively parallel models of the human circulatory system." In International Conference for High Performance Computing, Networking, Storage and Analysis, SC. Vol. 15-20-November-2015., 2015.
Randles, A, Draeger, EW, and Bailey, PE. "Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature." Journal of Computational Science 9 (2015): 70-75.
2016
Gounley, J, Chaudhury, R, Vardhan, M, Driscoll, M, Pathangey, G, Winarta, K, Ryan, J, Frakes, D, and Randles, A. "Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity?" In 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 3429-3432. Orlando, FL, USA: IEEE, 2016.

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