Publications

Randles, A., Draeger, E. W., Oppelstrup, T., Krauss, L., & Gunnels, J. (2015). Massively Parallel Models of the Human Circulatory System. In http://dl.acm.org/citation.cfm?id=2807676. Austin, TX: ACM. https://doi.org/10.1145/2807591.2807676

Randles, A., Draeger, E. W., & Bailey, P. E. (2015). Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature. Journal of Computational Science, 9, 70–75. https://doi.org/10.1016/j.jocs.2015.04.003

Whitley, H. D., Scullard, C. R., Benedict, L. X., Castor, J. I., Randles, A., Glosli, J. N., … Graziani, F. R. (2015). Lenard-Balescu calculations and classical molecular dynamics simulations of electrical and thermal conductivities of hydrogen plasmas. Contributions to Plasma Physics, 55(2–3), 192–202. https://doi.org/10.1002/ctpp.201400066

You, Y., Fu, H., Song, S. L., Randles, A., Kerbyson, D., Marquez, A., … Hoisie, A. (2015). Scaling Support Vector Machines on modern HPC platforms. Journal of Parallel and Distributed Computing, 76, 16–31. https://doi.org/10.1016/j.jpdc.2014.09.005

Randles, A., Draeger, E. W., & Michor, F. (2014). Analysis of pressure gradient across aortic stenosis with massively parallel computational simulations. In http://ieeexplore.ieee.org/document/7043018/. Cambridge, MA.

Kale, V., Randles, A., & Gropp, W. D. (2014). Locality-optimized mixed static/dynamic scheduling for improving load balancing on SMPs. In ACM International Conference Proceeding Series (Vol. 09-12-September-2014, pp. 115–116). https://doi.org/10.1145/2642769.2642788

Randles, A., & Kaxiras, E. (2014). Parallel in time approximation of the lattice Boltzmann method for laminar flows. Journal of Computational Physics, 270, 577–586. https://doi.org/10.1016/j.jcp.2014.04.006

Randles, A., Rand, D., Lee, C., Morrisett, G., & Pfister, H. (2014). Massively Parallel Model of Extended Memory Use In Evolutionary Game Dynamics. Presented at the IEEE International Parallel and Distributed Processing Symposium, Boston, MA: IEEE.

Randles, A., Kale, V., Hammond, J. R., Gropp, W., & Kaxiras, E. (2014). Performance analysis of the lattice Boltzmann model beyond Navier-Stokes. Presented at the IEEE International Parallel and Distributed Processing Symposium, IEEE.

Almendro, V., Cheng, Y.-K., Randles, A., Itzkovitz, S., Marusyk, A., Ametller, E., … Polyak, K. (2014). Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity. Cell Reports, 6(3), 514–527. https://doi.org/10.1016/j.celrep.2013.12.041

Randles, A., & Kaxiras, E. (2014). A spatio-temporal coupling method to reduce the time-to-solution of cardiovascular simulations. Proceedings of the International Parallel and Distributed Processing Symposium IPDPS. https://doi.org/10.1109/IPDPS.2014.68

Randles, A. (2014). MIC-SVM: Designing A Highly Efficient Support Vector Machine for Advanced Modern Multi-Core and Many-Core Architectures. In http://ieeexplore.ieee.org/abstract/document/6877312/. https://doi.org/10.1109/IPDPS.2014.88

Randles, A., Draeger, E., & Michor, F. (2014). Analysis of pressure gradient across aortic stenosis with massively parallel computational simulations. Computing in Cardiology, 41(January), 217–220.

Keyes, D. E., McInnes, L. C., Woodward, C., Gropp, W., Myra, E., Pernice, M., … Wohlmuth, B. (2013). Multiphysics simulations: Challenges and opportunities. International Journal of High Performance Computing Applications, 27(1), 4–83. https://doi.org/10.1177/1094342012468181

Randles, A. P. (2012). Massively parallel model of evolutionary game dynamics. Proceedings 2012 Sc Companion High Performance Computing Networking Storage and Analysis Scc 2012, 1531. https://doi.org/10.1109/SC.Companion.2012.307

Keyes, D., McInnes, L. C., Woodward, C., Gropp, W., Myra, E., Pernice, M., … (Idaho National Lab.). (2012). Multiphysics simulations: challenges and opportunities. Office of Scientific and Technical Information (OSTI). https://doi.org/10.2172/1034263

Randles, A., Baecher, M., Pfister, H., & Kaxiras, E. K. (2012). A Lattice Boltzmann Simulation of Hemodynamics in a Patient-Speci c Aortic Coarctation Model. Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenges:, 7746, 17–25. https://doi.org/10.1007/978-3-642-36961-2_3

Borkin, M. A., Gajos, K. Z., Peters, A., Mitsouras, D., Melchionna, S., Rybicki, F. J., … Pfister, H. (2011). Evaluation of artery visualizations for heart disease diagnosis. IEEE Transactions on Visualization and Computer Graphics, 17(12), 2479–2488. https://doi.org/10.1109/tvcg.2011.192

Peters, A., & Zeger, L. (2011). Efficient methods for broadcasting multi-slot messages with random access with capture. In 2011 - MILCOM 2011 Military Communications Conference (pp. 1838–1844). IEEE. https://doi.org/10.1109/milcom.2011.6127580

Randles, A., & Zeger, L. (2011). Efficient Resource Allocation for Broadcasting Multi-Slot Messages With Random Access with Capture. Presented at the IEEE Military Communications Conference, Baltimore, MD: IEEE.

Robson, B., Li, J., Dettinger, R., Peters, A., & Boyer, S. K. (2011). Drug discovery using very large numbers of patents: general strategy with extensive use of match and edit operations. Journal of Computer-Aided Molecular Design, 25(5), 427–441. https://doi.org/10.1007/s10822-011-9429-x

Randles, A., Melchionna, S., Kaxiras, E., Latt, J., Sircar, J., Bernaschi, M., … Succi, S. (2010). Multiscale simulation of cardiovascular flows on the IBM Bluegene/P: full heart-circulation system at red-blood cell resolution. Presented at the ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis, New Orleans, LA: ACM IEEE.

Randles, A., King, A., Budnik, T., McCarthy, P., Michaud, P., Mundy, M., … Stewart, G. (n.d.). Asynchronous task dispatch for high throughput computing for the eServer IBM Blue Gene Supercomputer. In http://ieeexplore.ieee.org/abstract/document/4536455/. Miami, FL. https://doi.org/10.1109/IPDPS.2008.4536455

Jiang, K., Thorsen, O., Peters, A., Smith, B., & Sosa, C. P. (2008). An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System. IEEE Transactions on Parallel and Distributed Systems, 19(1), 15–23. https://doi.org/10.1109/tpds.2007.70712

Pang, Y.-P., Mullins, T. J., Swartz, B. A., McAllister, J. S., Smith, B. E., Archer, C. J., … Pinnow, K. W. (2008). EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient. IBM Journal of Research and Development, 52(1.2), 69–81. https://doi.org/10.1147/rd.521.0069